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    Bio-Rad bio rad glc sensor chip
    Bio Rad Glc Sensor Chip, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 94/100, based on 184 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/proteon+glc+sensor+chip+bio+rad/ProteOn+GLC+Sensor+Chip/us11912776-765-13-13
    Average 94 stars, based on 184 article reviews
    bio rad glc sensor chip - by Bioz Stars, 2026-10
    94/100 stars

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    FACS:

    Article Title: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines rtTA3G 293T David Nemazee, Scripps Researsh, La Jolla (Ota et al., 2012) N/A Oligonucleotides Loop2b OligoLibrary CustomArray N/A NNK Library 32-185H SGI-DNA N/A Long Ultramers NNK IDT N/A Recombinant DNA pHL-SEC Aricescu et al., 2006 Addgene #99845 pFUSE2ss-CHIg-hG1 InvivoGen Cat# pfusess-hchg1 pFUSE2-CLIg-hL2 InvivoGen Cat# pfuse2-hcll2 pFUSE2-CLIg-hK InvivoGen Cat# pfusess-hchg1 pENTR/D-TOPO Ota et al., 2012 N/A pLenti-CMVTRE3G/Puro_Dest Ota et al., 2012 N/A psPAX2 Didier Trono, EPFL, Lausanne Switzerland AddGene#12260 pMD2.G Didier Trono, EPFL, Lausanne Switzerland AddGene#12259 Software and algorithms ProLuCID http://fields.scripps.edu/yates/ wp/?page_id=821 N/A DTASelect2.0 http://fields.scripps.edu/yates/ wp/?page_id=816 N/A Census2.0 http://fields.scripps.edu/yates/ wp/?page_id=824 N/A GlycoMSQuant v.1.8.2 https://github.com/proteomicsyates/ GlycoMSQuant N/A RAWConverter http://fields.scripps.edu/rawconv/ N/A Office 365 https://www.office.com/ N/A XCalibur Thermo Scientific Cat# OPTON-30965-7 Abstar (Briney et al., 2019); https://github.com/briney/abstar N/A Amazon EMR 6.4.0 https://aws.amazon.com/emr/ N/A Rosetta https://www.rosettacommons.org/ software/license-and-download N/A ProteON Manager Software Bio-RAD N/A ByosTM (Version 3.9) Protein Metrics Inc. N/A GraphPad Prism v9 GraphPad N/A XCalibur Version v4.2 Thermo Fisher N/A Orbitrap Fusion Tune application v3.2 Thermo Fisher N/A MotionCor2 Zheng et al., 2017 N/A Relion-2/3 Kimanius et al., 2016; Zivanov et al., 2018 N/A SWISS-MODEL Waterhouse et al., 2018 N/A SabPred Dunbar et al., 2016 N/A UCSF Chimera Pettersen et al., 2004 N/A GCTF Zhang, 2016 N/A COOT Emsley and Cowtan, 2004 N/A MolProbity Chen et al., 2010 N/A EMRinger Barad et al., 2015 N/A (Continued on next page) ll OPEN ACCESS Article e3 Immunity 55, 2149–2167.e1–e9, November 8, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Privateer Agirre et al., 2015 N/A Segger Pintilie and Chiu, 2012 N/A Illustrator Adobe N/A Leginon Suloway et al., 2005 N/A BD FACS Diva 6 BD N/A FlowJo v10.8 BD N/A Other Influx BD N/A ProteOn XPR36 Bio-Rad Cat# 176-0100 ProteOn GLC Sensor Chip Bio-Rad Cat# 76-5011 MicroCal VP-Capillary DSC Malven N/A Dawn HELEOS II Wyatt N/A Optilab T-REX Wyatt N/A GenWiz EZ Amplicon Service Genewiz/Azenta N/A HisTrap HP Cytiva/GE Cat# 17371205 Superdex 200 10/300 GL Cytiva/GE Cat# 17517501 EasySpray PepMap RSLC C18 column Thermo Fisher Scientific Cat# ES905 PVDF protein-binding membrane Millipore Cat# MAIPS4510 C18 ZipTip Merck Milipore Cat# ZTC18S008 Vivaspin 500, 3 kDa MWCO, Polyethersulfone Sigma-Aldrich Cat# GE28-9322-18 PepMap100 C18 3UM 75UMx2CM Nanoviper Thermo Scientific Cat# 164946 Vitrobot mark IV Thermo Fisher Scientific N/A Titan Krios Thermo Fisher Scientific N/A Talos Arctica Thermo Fisher Scientific N/A K2 Summit direct electron detector Gatan N/A Unformulated mRNA Moderna N/A NovoCyte 3000 Agilent N/A ll OPEN ACCESSArticle ..

    Article Title: Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A .. REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A ..

    Amplification:

    Article Title: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines rtTA3G 293T David Nemazee, Scripps Researsh, La Jolla (Ota et al., 2012) N/A Oligonucleotides Loop2b OligoLibrary CustomArray N/A NNK Library 32-185H SGI-DNA N/A Long Ultramers NNK IDT N/A Recombinant DNA pHL-SEC Aricescu et al., 2006 Addgene #99845 pFUSE2ss-CHIg-hG1 InvivoGen Cat# pfusess-hchg1 pFUSE2-CLIg-hL2 InvivoGen Cat# pfuse2-hcll2 pFUSE2-CLIg-hK InvivoGen Cat# pfusess-hchg1 pENTR/D-TOPO Ota et al., 2012 N/A pLenti-CMVTRE3G/Puro_Dest Ota et al., 2012 N/A psPAX2 Didier Trono, EPFL, Lausanne Switzerland AddGene#12260 pMD2.G Didier Trono, EPFL, Lausanne Switzerland AddGene#12259 Software and algorithms ProLuCID http://fields.scripps.edu/yates/ wp/?page_id=821 N/A DTASelect2.0 http://fields.scripps.edu/yates/ wp/?page_id=816 N/A Census2.0 http://fields.scripps.edu/yates/ wp/?page_id=824 N/A GlycoMSQuant v.1.8.2 https://github.com/proteomicsyates/ GlycoMSQuant N/A RAWConverter http://fields.scripps.edu/rawconv/ N/A Office 365 https://www.office.com/ N/A XCalibur Thermo Scientific Cat# OPTON-30965-7 Abstar (Briney et al., 2019); https://github.com/briney/abstar N/A Amazon EMR 6.4.0 https://aws.amazon.com/emr/ N/A Rosetta https://www.rosettacommons.org/ software/license-and-download N/A ProteON Manager Software Bio-RAD N/A ByosTM (Version 3.9) Protein Metrics Inc. N/A GraphPad Prism v9 GraphPad N/A XCalibur Version v4.2 Thermo Fisher N/A Orbitrap Fusion Tune application v3.2 Thermo Fisher N/A MotionCor2 Zheng et al., 2017 N/A Relion-2/3 Kimanius et al., 2016; Zivanov et al., 2018 N/A SWISS-MODEL Waterhouse et al., 2018 N/A SabPred Dunbar et al., 2016 N/A UCSF Chimera Pettersen et al., 2004 N/A GCTF Zhang, 2016 N/A COOT Emsley and Cowtan, 2004 N/A MolProbity Chen et al., 2010 N/A EMRinger Barad et al., 2015 N/A (Continued on next page) ll OPEN ACCESS Article e3 Immunity 55, 2149–2167.e1–e9, November 8, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Privateer Agirre et al., 2015 N/A Segger Pintilie and Chiu, 2012 N/A Illustrator Adobe N/A Leginon Suloway et al., 2005 N/A BD FACS Diva 6 BD N/A FlowJo v10.8 BD N/A Other Influx BD N/A ProteOn XPR36 Bio-Rad Cat# 176-0100 ProteOn GLC Sensor Chip Bio-Rad Cat# 76-5011 MicroCal VP-Capillary DSC Malven N/A Dawn HELEOS II Wyatt N/A Optilab T-REX Wyatt N/A GenWiz EZ Amplicon Service Genewiz/Azenta N/A HisTrap HP Cytiva/GE Cat# 17371205 Superdex 200 10/300 GL Cytiva/GE Cat# 17517501 EasySpray PepMap RSLC C18 column Thermo Fisher Scientific Cat# ES905 PVDF protein-binding membrane Millipore Cat# MAIPS4510 C18 ZipTip Merck Milipore Cat# ZTC18S008 Vivaspin 500, 3 kDa MWCO, Polyethersulfone Sigma-Aldrich Cat# GE28-9322-18 PepMap100 C18 3UM 75UMx2CM Nanoviper Thermo Scientific Cat# 164946 Vitrobot mark IV Thermo Fisher Scientific N/A Titan Krios Thermo Fisher Scientific N/A Talos Arctica Thermo Fisher Scientific N/A K2 Summit direct electron detector Gatan N/A Unformulated mRNA Moderna N/A NovoCyte 3000 Agilent N/A ll OPEN ACCESSArticle ..

    Protein Binding:

    Article Title: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines rtTA3G 293T David Nemazee, Scripps Researsh, La Jolla (Ota et al., 2012) N/A Oligonucleotides Loop2b OligoLibrary CustomArray N/A NNK Library 32-185H SGI-DNA N/A Long Ultramers NNK IDT N/A Recombinant DNA pHL-SEC Aricescu et al., 2006 Addgene #99845 pFUSE2ss-CHIg-hG1 InvivoGen Cat# pfusess-hchg1 pFUSE2-CLIg-hL2 InvivoGen Cat# pfuse2-hcll2 pFUSE2-CLIg-hK InvivoGen Cat# pfusess-hchg1 pENTR/D-TOPO Ota et al., 2012 N/A pLenti-CMVTRE3G/Puro_Dest Ota et al., 2012 N/A psPAX2 Didier Trono, EPFL, Lausanne Switzerland AddGene#12260 pMD2.G Didier Trono, EPFL, Lausanne Switzerland AddGene#12259 Software and algorithms ProLuCID http://fields.scripps.edu/yates/ wp/?page_id=821 N/A DTASelect2.0 http://fields.scripps.edu/yates/ wp/?page_id=816 N/A Census2.0 http://fields.scripps.edu/yates/ wp/?page_id=824 N/A GlycoMSQuant v.1.8.2 https://github.com/proteomicsyates/ GlycoMSQuant N/A RAWConverter http://fields.scripps.edu/rawconv/ N/A Office 365 https://www.office.com/ N/A XCalibur Thermo Scientific Cat# OPTON-30965-7 Abstar (Briney et al., 2019); https://github.com/briney/abstar N/A Amazon EMR 6.4.0 https://aws.amazon.com/emr/ N/A Rosetta https://www.rosettacommons.org/ software/license-and-download N/A ProteON Manager Software Bio-RAD N/A ByosTM (Version 3.9) Protein Metrics Inc. N/A GraphPad Prism v9 GraphPad N/A XCalibur Version v4.2 Thermo Fisher N/A Orbitrap Fusion Tune application v3.2 Thermo Fisher N/A MotionCor2 Zheng et al., 2017 N/A Relion-2/3 Kimanius et al., 2016; Zivanov et al., 2018 N/A SWISS-MODEL Waterhouse et al., 2018 N/A SabPred Dunbar et al., 2016 N/A UCSF Chimera Pettersen et al., 2004 N/A GCTF Zhang, 2016 N/A COOT Emsley and Cowtan, 2004 N/A MolProbity Chen et al., 2010 N/A EMRinger Barad et al., 2015 N/A (Continued on next page) ll OPEN ACCESS Article e3 Immunity 55, 2149–2167.e1–e9, November 8, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Privateer Agirre et al., 2015 N/A Segger Pintilie and Chiu, 2012 N/A Illustrator Adobe N/A Leginon Suloway et al., 2005 N/A BD FACS Diva 6 BD N/A FlowJo v10.8 BD N/A Other Influx BD N/A ProteOn XPR36 Bio-Rad Cat# 176-0100 ProteOn GLC Sensor Chip Bio-Rad Cat# 76-5011 MicroCal VP-Capillary DSC Malven N/A Dawn HELEOS II Wyatt N/A Optilab T-REX Wyatt N/A GenWiz EZ Amplicon Service Genewiz/Azenta N/A HisTrap HP Cytiva/GE Cat# 17371205 Superdex 200 10/300 GL Cytiva/GE Cat# 17517501 EasySpray PepMap RSLC C18 column Thermo Fisher Scientific Cat# ES905 PVDF protein-binding membrane Millipore Cat# MAIPS4510 C18 ZipTip Merck Milipore Cat# ZTC18S008 Vivaspin 500, 3 kDa MWCO, Polyethersulfone Sigma-Aldrich Cat# GE28-9322-18 PepMap100 C18 3UM 75UMx2CM Nanoviper Thermo Scientific Cat# 164946 Vitrobot mark IV Thermo Fisher Scientific N/A Titan Krios Thermo Fisher Scientific N/A Talos Arctica Thermo Fisher Scientific N/A K2 Summit direct electron detector Gatan N/A Unformulated mRNA Moderna N/A NovoCyte 3000 Agilent N/A ll OPEN ACCESSArticle ..

    Membrane:

    Article Title: Human immunoglobulin repertoire analysis guides design of vaccine priming immunogens targeting HIV V2-apex broadly neutralizing antibody precursors
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: Cell lines rtTA3G 293T David Nemazee, Scripps Researsh, La Jolla (Ota et al., 2012) N/A Oligonucleotides Loop2b OligoLibrary CustomArray N/A NNK Library 32-185H SGI-DNA N/A Long Ultramers NNK IDT N/A Recombinant DNA pHL-SEC Aricescu et al., 2006 Addgene #99845 pFUSE2ss-CHIg-hG1 InvivoGen Cat# pfusess-hchg1 pFUSE2-CLIg-hL2 InvivoGen Cat# pfuse2-hcll2 pFUSE2-CLIg-hK InvivoGen Cat# pfusess-hchg1 pENTR/D-TOPO Ota et al., 2012 N/A pLenti-CMVTRE3G/Puro_Dest Ota et al., 2012 N/A psPAX2 Didier Trono, EPFL, Lausanne Switzerland AddGene#12260 pMD2.G Didier Trono, EPFL, Lausanne Switzerland AddGene#12259 Software and algorithms ProLuCID http://fields.scripps.edu/yates/ wp/?page_id=821 N/A DTASelect2.0 http://fields.scripps.edu/yates/ wp/?page_id=816 N/A Census2.0 http://fields.scripps.edu/yates/ wp/?page_id=824 N/A GlycoMSQuant v.1.8.2 https://github.com/proteomicsyates/ GlycoMSQuant N/A RAWConverter http://fields.scripps.edu/rawconv/ N/A Office 365 https://www.office.com/ N/A XCalibur Thermo Scientific Cat# OPTON-30965-7 Abstar (Briney et al., 2019); https://github.com/briney/abstar N/A Amazon EMR 6.4.0 https://aws.amazon.com/emr/ N/A Rosetta https://www.rosettacommons.org/ software/license-and-download N/A ProteON Manager Software Bio-RAD N/A ByosTM (Version 3.9) Protein Metrics Inc. N/A GraphPad Prism v9 GraphPad N/A XCalibur Version v4.2 Thermo Fisher N/A Orbitrap Fusion Tune application v3.2 Thermo Fisher N/A MotionCor2 Zheng et al., 2017 N/A Relion-2/3 Kimanius et al., 2016; Zivanov et al., 2018 N/A SWISS-MODEL Waterhouse et al., 2018 N/A SabPred Dunbar et al., 2016 N/A UCSF Chimera Pettersen et al., 2004 N/A GCTF Zhang, 2016 N/A COOT Emsley and Cowtan, 2004 N/A MolProbity Chen et al., 2010 N/A EMRinger Barad et al., 2015 N/A (Continued on next page) ll OPEN ACCESS Article e3 Immunity 55, 2149–2167.e1–e9, November 8, 2022 .. REAGENT or RESOURCE SOURCE IDENTIFIER Privateer Agirre et al., 2015 N/A Segger Pintilie and Chiu, 2012 N/A Illustrator Adobe N/A Leginon Suloway et al., 2005 N/A BD FACS Diva 6 BD N/A FlowJo v10.8 BD N/A Other Influx BD N/A ProteOn XPR36 Bio-Rad Cat# 176-0100 ProteOn GLC Sensor Chip Bio-Rad Cat# 76-5011 MicroCal VP-Capillary DSC Malven N/A Dawn HELEOS II Wyatt N/A Optilab T-REX Wyatt N/A GenWiz EZ Amplicon Service Genewiz/Azenta N/A HisTrap HP Cytiva/GE Cat# 17371205 Superdex 200 10/300 GL Cytiva/GE Cat# 17517501 EasySpray PepMap RSLC C18 column Thermo Fisher Scientific Cat# ES905 PVDF protein-binding membrane Millipore Cat# MAIPS4510 C18 ZipTip Merck Milipore Cat# ZTC18S008 Vivaspin 500, 3 kDa MWCO, Polyethersulfone Sigma-Aldrich Cat# GE28-9322-18 PepMap100 C18 3UM 75UMx2CM Nanoviper Thermo Scientific Cat# 164946 Vitrobot mark IV Thermo Fisher Scientific N/A Titan Krios Thermo Fisher Scientific N/A Talos Arctica Thermo Fisher Scientific N/A K2 Summit direct electron detector Gatan N/A Unformulated mRNA Moderna N/A NovoCyte 3000 Agilent N/A ll OPEN ACCESSArticle ..

    Software:

    Article Title: Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A .. REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A ..

    Sequencing:

    Article Title: Rapid and Focused Maturation of a VRC01-Class HIV Broadly Neutralizing Antibody Lineage Involves Both Binding and Accommodation of the N276-Glycan
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A .. REAGENT or RESOURCE SOURCE IDENTIFIER Software and Algorithms AbStar Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/abstar Clonify Bryan Briney (briney@scripps.edu), The Scripps Research Instiute https://github.com/briney/ clonify-python ETE Toolkit Jaime Huerta-Cepa (jhuerta@crg.es), Centre for Genomic Regulation, Spain http://ete.cgenomics.org FastTree Morgan N. Price (MorganNPrice@yahoo.com) Lawrence Berkely University http://www.microbesonline.org/ fasttree; RRID:SCR_015501 FigTree Andrew Rambaut (andrew.rambaut@zoo.ox. ac.uk) University of Edinburgh http://tree.bio.ed.ac.uk/software/ figtree/; RRID:SCR_008515 Full-Length Env Analysis (FLEA) pipeline Ben Murrell (murrellb@gmail.com), Karolinska Institutet, Sweden. https://github.com/veg/flea-pipeline/ IMGT/V-QUEST International ImMunoGeneTics Information System; Marie-Paule Lefranc (marie-paule. lefranc@igh.cnrs.fr), University of Montpellier, France www.imgt.org; RRID: SCR_012780 MAFFT Kazutaka Katoh (kkatoh@kuicr.kyoto-u.ac.jp) Kyoto University, Japan http://www.biophys.kyoto-u.ac.jp/ katoh/programs/align/mafft; RRID: SCR_011811 Microsoft Excel Microsoft Corp RRID: SCR_016137 PacBio SMRTportal Version 2.3 Pacific Biosciences http://www.pacb.com/products- and-services/analytical-software/ smrt-analysis/; RRID: SCR_002942 PANDAseq Josh D. Neufeld (ac.oolretawu@dlefuenj) University of Waterloo, Canada https://github.com/neufeld/ pandaseq; RRID: SCR_002705 PRISM6 GraphPad http://www.graphpad.com/; RRID: SCR_002798 ProteOn Manager Software Bio-Rad Cat# 1760200 PyMol Molecular Graphics Systems Version 1.5.0.4 Schrodinger LLC https://www.schrodinger.com/ pymol; RRID: SCR_000305 USEARCH Robert C. Edgar (robert@drive5.com) http://www.drive5.com/usearch/ Other 96S Super Magnet Plate ALPAQUA Cat# A001322 AKTA Pure 25M2 GE Healthcare Life Sciences Cat# 29018228 C1000 Thermocycler Bio-Rad Cat# 1851196 FACS ARIA III BD Biosciences Cat# 744763 MiSeq Sequencer Illumina N/A PacBio RS-II Sequencer Pacific Biosciences N/A ProteOn XPR36 Protein Interaction Array System Bio-Rad Cat# 1760100 ProteOn GLC Sensor Chip Bio-Rad Cat# 1765011 Qubit 3.0 Fluorometer Thermo Fisher Cat# Q33216 Sanger Sequencing: bacterial colonies and plasmids Genewiz https://www.genewiz.com/ Superdex 200 HiLoad 16/600 column GE Healthcare Life Sciences Cat# 28989335 Synergy H1 Hybrid-Mode Microplate Reader Biotek N/A VersaMax Microplate Reader Molecular Devices N/A ..



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